Publications

2019:

• Iliana B. Baums, Andrew C. Baker, Sarah W. Davies, Andréa G. Grottoli, Carly D. Kenkel, Sheila A. Kitchen, Ilsa B. Kuffner, Todd C. LaJeunesse, Mikhail V. Matz, Margaret W. Miller, John E. Parkinson, Andrew A. Shantz. (2019). Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic. https://esajournals.onlinelibrary.wiley.com/doi/full/10.1002/eap.1978
• Shelby E. McIlroy, Ross Cunning, Andrew C. Baker, Mary Alice Coffroth. (2019). Competition and succession among coral endosymbionts. https://onlinelibrary.wiley.com/doi/full/10.1002/ece3.5749
• Ross Cunning, Rachel N. Silverstein, Brian B. Barnes, Andrew C. Baker. (2019). Extensive coral mortality and critical habitat loss following dredging and their association with remotely-sensed sediment plumes. https://www.sciencedirect.com/science/article/abs/pii/S0025326X19303868
• Romain Chaput, Claire B. Paris, Steven G. Smith, Andrew C. Baker. (2019). Reef fish larvae visually discriminate coral diversity during settlement. https://www.ingentaconnect.com/content/umrsmas/bullmar/2019/00000095/00000003/art00008
• Edmunds, P. J., Adam, T. C., Baker, A. C., Doo, S. S., Glynn, P. W., Manzello, D. P., Silbiger, N. J., Smith, T. B., Fong, P. (2019). Why more comparative approaches are required in time-series analyses of coral reef ecosystems. https://www.int-res.com/abstracts/meps/v608/p297-306/
• Mohammad Ghiasian, Jane Carrick, Diego Lirman, Andrew Baker, Julie Ruiz-Mrechan, Joel Amendolara, Brian Haus, Landolf Rhode-Barbarigos. (2019). Exploring Coral Reef Restoration for Wave-Energy Dissipation through Experimental Laboratory Testing. https://henry.baw.de/bitstream/20.500.11970/106714/1/097_Coastal_Structures_2019.pdf
• John E. Parkinson, Andrew C. Baker, Iliana B. Baums, Sarah W. Davies, Andréa G. Grottoli, Sheila A. Kitchen, Mikhail V. Matz, Margaret W. Miller, Andrew A. Shantz, & Carly D. Kenkel. (2019). Molecular tools for coral reef restoration: Beyond biomarker discovery. https://conbio.onlinelibrary.wiley.com/doi/full/10.1111/conl.12687
• Gwenn M. M. Hennon, Olivia M. Williamson, María D. Hernández Limón, Sheean T. Haley, Sonya T. Dyhrman. (2019). Non-linear Physiology and Gene Expression Responses of Harmful Alga Heterosigma akashiwo to Rising CO2 https://www.sciencedirect.com/science/article/abs/pii/S1434461018301147

2018:

• Chris Langdon, Rebecca Albright, Andrew C. Baker, & Paul Jones. (2018). Two threatened Caribbean coral species have contrasting responses to combined temperature and acidification stress. https://aslopubs.onlinelibrary.wiley.com/doi/full/10.1002/lno.10952
• Cunning, R., Bay, R. A., Gillette, P., Baker, A. C., & Traylor-Knowles, N. (2018). Comparative analysis of the Pocillopora damicornis genome highlights role of immune system in coral evolution. https://www.nature.com/articles/s41598-018-34459-8
• Peter W. Glynn, Joshua S. Feingold, Andrew Baker, Stuart Banks, Iliana B. Baums, Julia Cole, Mitchell W. Colgan, PeggyFong, Peter J.Glynn, Inti Keith, Derek Manzello, Bernhard Riegl, Benjamin I. Ruttenberg, Tyler B. Smith, Mariana Vera-Zambrano (2018). State of corals and coral reefs of the Galápagos Islands (Ecuador): Past, present and future. https://www.sciencedirect.com/science/article/abs/pii/S0025326X18304004
• Ross Cunning, Rachel N. Silverstein, Andrew C. Baker. (2018). Symbiont shuffling linked to differential photochemical dynamics of Symbiodinium in three Caribbean reef corals. https://link.springer.com/article/10.1007/s00338-017-1640-3
• Kate M. Quigley, Andrew C. Baker, Mary Alice Coffroth, Bette L. Willis, Madeleine J. H. cvan Oppen. (2018). Bleaching Resistance and the Role of Algal Endosymbionts. https://link.springer.com/chapter/10.1007/978-3-319-75393-5_6
• Xaymara M. Serrano, Margaret W. Miller, James C. Hendee, Brittany A. Jensen, Justine Z. Gapayao, Christina Pasparakis, Martin Grosell, Andrew C. Baker (2018). Effects of thermal stress and nitrate enrichment on the larval performance of two Caribbean reef corals. 

2017:

• Júlia N. de Souza, Flávia L. D. Nunes, Carla Zilberberg, Juan A. Sanchez, Alvaro E. Migotto, Bert W. Hoeksema, Xaymara M. Serrano, Andrew C. Baker, Alberto Lindner (2017). Contrasting patterns of connectivity among endemic and widespread fire coral species (Millepora spp.) in the tropical Southwestern Atlantic. 
• Rachel N. Silverstein, Ross Cunning, Andrew C. Baker (2017). Tenacious D: Symbiodinium in clade D remain in reef corals at both high and low temperature extremes despite impairment. 
• Remy R. Okazaki, Erica K. Towle, Ruben Hooidonk, Carolina Mor, Rivah N. Winter, Alan M. Piggot, Ross Cunning, Andrew C. Baker, James S. Klaus, Peter K. Swart, Chris Langdon (2017). Species-specific responses to climate change and community composition determine future calcification rates of Florida Keys reefs.
•  Erica K. Towle, Ana M. Palacio-Castro, Andrew C. Baker, Chris Langdon (2017). Source location and food availability determine the growth response of Orbicella faveolata to climate change stressors.
• Yohan D. Louis, Ranjeet Bhagooli, Carly D. Kenkel, Andrew C. Baker, Sabrina D. Dyall (2017). Gene expression biomarkers of heat stress in scleractinian corals: Promises and limitations.
• Andrew C Baker, Adrienne M. S. Correa, Ross Cunning (2017). Diversity, distribution and stability of Symbiodinium in reef corals of the eastern tropical pacific.

2016:

• Shelby E. McIlroy, Phillip Gillette, Ross Cunning, Anke Klueter, Tom Capo, Andrew C. Baker, Mary Alice Coffroth (2016). The effects of Symbiodinium (Pyrrhophyta) identity on growth, survivorship, and thermal tolerance of newly settled coral recruits.
• Herman H. Wirshing, Andrew C. Baker (2016). On the difficulty of recognizing distinct Symbiodinium species in mixed communities of algal symbionts.
• Erica K. Towle, Andrew C. Baker, Chris Langdon (2016). Preconditioning to high CO2 exacerbates the response of the Caribbean branching coral Porites porites to high temperature stress.
• Xaymara M. Serrano, Iliana B. Baums, Tyler B. Smith, Ross J. Jones, Tonya L. Shearer, Andrew C. Baker (2016). Long distance dispersal and vertical gene flow in the Caribbean brooding coral Porites astreoides.
• Wade R. McGillis, Derek Manzello, Tyler B. Smith, Andrew C. Baker, Peggy Fong, Peter Glynn, Jennifer Smith, Yuichiro Takeshita, Todd R. Martz, Diana Hsueh, Chris Langdon, Nichole Price, Juan Mate (2016). Changes in coral reef metabolism during the 2015 El Niño in the eastern Pacific.

2015:

•  Timothy R. McClanahan, Craig J. Starger, Andrew C. Baker (2015). Decadal changes in common reef coral populations and their associations with algal symbionts (Symbiodinium spp.).
• Andrew C. Baker, Ross Cunning (2015). Coral “Bleaching” ︁ as a Generalized Stress Response to Environmental Disturbance.
• Herman H. Wirshing, Andrew C. Baker (2015). Molecular and morphological species boundaries in the gorgonian octocoral genus Pterogorgia (Octocorallia: Gorgoniidae).
• Shankar Aswani, Peter J. Mumby, Andrew C. Baker, Patrick Christie, Laurence J. McCook, Robert S. Steneck, Robert H. Richmond (2015). Scientific frontiers in the management of coral reefs.
• Ross Cunning, Rachel N. Silverstein, Andrew C. Baker (2015). Investigating the causes and consequences of symbiont shuffling in a multi-partner reef coral symbiosis under environmental change.
• Ross Cunning, Nathan Vaughan, Phillip Gillette, Tom R. Capo, Juan L. Mate, Andrew C. Baker (2015). Dynamic regulation of partner abundance mediates response of reef coral symbioses to environmental change.
• Ross Cunning, Phillip Gillette, Tom Capo, Kimberly Galvez, Andrew C. Baker (2015). Growth tradeoffs associated with thermotolerant symbionts in the coral Pocillopora damicornis are lost in warmer oceans.
• Rachel N. Silverstein, Ross Cunning, Andrew C. Baker (2015). Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals.

2014:

•  Andrew C. Baker (2014). Climate Change: Many Ways to Beat the Heat for Reef Corals.
• Riccardo Rodolfo‐Metalpa, Mia O. Hoogenboom, Cécile Rottier, Alfonso Ramos‐Esplá, Andrew C. Baker, Maoz Fine, Christine Ferrier‐Pagès (2014). Thermally tolerant corals have limited capacity to acclimatize to future warming.
• Diego Lirman, Stephanie Schopmeyer, Victor Galvan, Crawford Drury, Andrew C. Baker, Iliana B Baums (2014). Growth Dynamics of the Threatened Caribbean Staghorn Coral Acropora cervicornis: Influence of Host Genotype, Symbiont Identity, Colony Size, and Environmental Setting.
• Xaymara Serrano, Iliana B. Baums, K O'Reilly, Tyler B. Smith, RJ Jones, TL Shearer, FLD Nunes, AC Baker (2014). Geographic differences in vertical connectivity in the Caribbean coral Montastraea cavernosa despite high levels of horizontal connectivity at shallow depths.
• Herman H. Wirshing, Andrew C. Baker (2014). Molecular evolution of calcification genes in morphologically similar but phylogenetically unrelated scleractinian corals.
• Ross Cunning, Andrew C. Baker (2014). Not just who, but how many: the importance of partner abundance in reef coral symbioses.
• Andrew C. Baker (2014). What is natural? Shifting baselines in marine conservation

2013:

• Herman H Wirshing, Kevin A Feldheim, Andrew C. Baker (2013). Vectored dispersal of Symbiodinium by larvae of a Caribbean gorgonian octocoral.
• Ross Cunning, Peter W. Glynn, Andrew C. Baker (2013). Flexible associations between Pocillopora corals and Symbiodinium limit utility of symbiosis ecology in defining species.
• Vianney Denis, Mireille M. M. Guillaume, Madeleine Goutx, Stéphane de Palmas, Julien Debreuil, Andrew C. Baker, Roxane K. Boonstra, J. Henrich Bruggemann (2013). Fast growth may impair regeneration capacity in the branching coral Acropora muricata.
• David A Feary, John A Burt, Andrew G Bauman, Shaker Al Hazeem, Mohamed A Abdel-Moati, Khalifa A Al-Khalifa, Donald M Anderson, Carl Amos, Andrew C. Baker, Aaron Bartholomew, Rita Bento, Geórgenes H Cavalcante, Chaolun Allen Chen, Steve L Coles, Koosha Dab, Ashley M Fowler, David George, Edwin Grandcourt, Ross Hill, David M. John, David A. Jones, Shashank Keshavmurthy, Huda Mahmoud, Mahdi Moradi Och Tapeh, Pargol Ghavam Mostafavi, Humood Naser, Michel Pichon, Sam Purkis, Bernhard Riegl, Kaveh Samimi-Namin, Charles Sheppard, Jahangir Vajed Samiei, Christian R Voolstra, Joerg Wiedenmann (2013). Critical research needs for identifying future changes in Gulf coral reef ecosystems.
• B Hume, C D’Angelo, J Burt, Andrew C. Baker, B Riegl, J Wiedenmann (2013). Corals from the Persian/Arabian Gulf as models for thermotolerant reef-builders: Prevalence of clade C3 Symbiodinium, host fluorescence and ex situ temperature tolerance.
• Craig J. Starger, Paul H. Barber, Mark V. Erdmann, Abdul H. A. Toha, Andrew C. Baker (2013). Strong genetic structure among coral populations within a conservation priority region, the Bird's Head Seascape (Papua and West Papua, Indonesia).
• Shashank Keshavmurthy, Sung-Yin Yang, Ada Alamaru, Yao-Yang Chuang, Michel Pichon, David Obura, Silvia Fontana, Stephane De Palmas, Fabrizio Stefani, Francesca Benzoni, Angus MacDonald, Annika ME Noreen, Chienshun Chen, Carden C. Wallace, Ruby Moothein Pillay, Vianney Denis, Affendi Yang Amri, James D. Reimer, Takuma Mezaki, Charles Sheppard, Yossi Loya, Avidor Abelson, Mohammed Suleiman Mohammed, Andrew C. Baker, Pargol Ghavam Mostafavi, Budiyanto A. Suharsono, Chaolun Allen Chen (2013). DNA barcoding reveals the coral “laboratory-rat”, Stylophora pistillata encompasses multiple identities.
• Ross Cunning, Andrew C. Baker (2013). Excess algal symbionts increase the susceptibility of reef corals to bleaching.
• Steve V. Vollmer, Andrew C. Baker, Mary-Alice Coffroth, C. Drew Harvell, Mónica Medina (2013). Understanding the Coral Holobiont through Science and Scuba.
• Andrew C. Baker, Tim R. McClanahan, Craig J. Starger, Roxane K. Boonstra (2013). Long-term monitoring of algal symbiont communities in corals reveals stability is taxon dependent and driven by site-specific thermal regime.

2012:

• Michael Stat, Andrew C. Baker, David G. Bourne, Adrienne M. S. Correa, Zac Forsman, Megan J. Huggett, Xavier Pochon, Derek Skillings, Robert J. Toonen, Madeleine J.H. van Oppen, Ruth D Gates (2012). Molecular Delineation of Species in the Coral Holobiont.
• Dalit Meron, Riccardo Rodolfo-Metalpa, Ross Cunning, Andrew C. Baker, Maoz Fine, Ehud Banin (2012). Changes in coral microbial communities in response to a natural pH gradient.
• Tim R. McClanahan, Simon D. Donner, Jeffrey A. Maynard, M. Aaron MacNeil, Nicholas A. J. Graham, Joseph Maina, Andrew C. Baker, Maria Beger, Stuart J. Campbell, Emily S. Darling, C. Mark Eakin, Scott F. Heron, Stacy D. Jupiter, Carolyn J. Lundquist, Elizabeth McLeod, Peter J. Mumby, Michelle J. Paddack, Elizabeth R. Selig, Robert van Woesik (2012). Prioritizing key resilience indicators to support coral reef management in a changing climate.
• Rachel N. Silverstein, Adrienne M. S. Correa, Andrew C. Baker (2012). Specificity is rarely absolute in coral–algal symbiosis: implications for coral response to climate change.
• Timery S. DeBoer, Andrew C. Baker, Mark V. Erdmann, Ambariyanto, Paul R. Jones, Paul H. Barber (2012). Patterns of Symbiodinium distribution in three giant clam species across the biodiverse Bird’s Head region of Indonesia.

For more publications before 2012, please visit Dr. Baker's Google Scholar page.